If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ), 'gf_id' => 'HOM05D000843', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000843' ), 'data_identifier' => 'HOM05D000843', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000843', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p34040' => 'bna', 'A02p00320' => 'bna', 'A02p18870' => 'bna', 'A03p04420' => 'bna', 'A03p26790' => 'bna', 'A03p41910' => 'bna', 'A05p28010' => 'bna', 'A05p28040' => 'bna', 'A06p31920' => 'bna', 'A07p29690' => 'bna', 'A07p39590' => 'bna', 'A08p02810' => 'bna', 'A10p18960' => 'bna', 'Aa31LG1G13660' => 'aar', 'Aa31LG1G16870' => 'aar', 'Aa31LG3G17020' => 'aar', 'Aa31LG4G4060' => 'aar', 'Aa31LG5G8440' => 'aar', 'Aa31LG7G3040' => 'aar', 'Aa31LG8G7530' => 'aar', 'Aa31LG8G7580' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.4205' => 'aag', 'Actinidia06324' => 'ach', 'Actinidia22476' => 'ach', 'Actinidia22477' => 'ach', 'Actinidia25388' => 'ach', 'Actinidia32970' => 'ach', 'Actinidia39383' => 'ach', 'Ah.03g140360' => 'amhyb', 'Ah.04g161520' => 'amhyb', 'Ah.05g178340' => 'amhyb', 'Ah.06g191230' => 'amhyb', 'Ah.06g193520' => 'amhyb', 'Ah.16g101320' => 'amhyb', 'AL2G33530' => 'aly', 'AL3G34690' => 'aly', 'AL4G20610' => 'aly', 'AL6G20590' => 'aly', 'AL6G32730' => 'aly', 'AL8G42600' => 'aly', 'Aqoxy2G00022' => 'aox', 'Aqoxy5G01826' => 'aox', 'arahy.Tifrunner.gnm1.ann1.020U4T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6X6PIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.798WTR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7BH3EL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DB2WGP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J729H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAVD32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KM0LRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY6GZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7XF8N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW2WXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VSW4LH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9B30W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WD0BS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSV7XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YY36K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6FJX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZJ47BD' => 'arhy', 'AT1G73730' => 'ath', 'AT2G27050' => 'ath', 'AT3G20770' => 'ath', 'AT5G10120' => 'ath', 'AT5G21120' => 'ath', 'AT5G65100' => 'ath', 'ATR0068G063' => 'atr', 'ATR0605G094' => 'atr', 'Atru.chr12.1125' => 'acertr', 'Atru.chr3.2514' => 'acertr', 'Atru.chr3.2515' => 'acertr', 'Atru.chr3.2868' => 'acertr', 'Atru.chr3.2880' => 'acertr', 'AUR62000004' => 'cqu', 'AUR62000081' => 'cqu', 'AUR62019253' => 'cqu', 'AUR62028928' => 'cqu', 'AUR62034106' => 'cqu', 'AUR62034107' => 'cqu', 'AUR62034108' => 'cqu', 'AUR62041277' => 'cqu', 'AUR62043679' => 'cqu', 'BcaB01g03042' => 'bca', 'BcaB02g09861' => 'bca', 'BcaB03g15079' => 'bca', 'BcaB03g15726' => 'bca', 'BcaB04g17206' => 'bca', 'BcaB04g19124' => 'bca', 'BcaB04g20629' => 'bca', 'BcaB05g22776' => 'bca', 'BcaB05g24811' => 'bca', 'BcaB06g26147' => 'bca', 'BcaB06g26300' => 'bca', 'BcaB07g33097' => 'bca', 'BcaB08g36491' => 'bca', 'BcaC01g01272' => 'bca', 'BcaC01g02739' => 'bca', 'BcaC01g03540' => 'bca', 'BcaC01g04919' => 'bca', 'BcaC03g13293' => 'bca', 'BcaC03g13830' => 'bca', 'BcaC03g15454' => 'bca', 'BcaC04g19523' => 'bca', 'BcaC05g28283' => 'bca', 'BcaC08g45624' => 'bca', 'BcaC08g46794' => 'bca', 'BcaC09g49020' => 'bca', 'BcaNung05988' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01140' => 'bna', 'BolC1t04303H' => 'bol', 'BolC2t06388H' => 'bol', 'BolC2t07097H' => 'bol', 'BolC3t13022H' => 'bol', 'BolC3t15553H' => 'bol', 'BolC3t17417H' => 'bol', 'BolC3t18365H' => 'bol', 'BolC3t21325H' => 'bol', 'BolC5t33063H' => 'bol', 'BolC6t38500H' => 'bol', 'BolC6t39823H' => 'bol', 'BolC9t58357H' => 'bol', 'BraA01t03507Z' => 'bra', 'BraA02t05017Z' => 'bra', 'BraA02t05616Z' => 'bra', 'BraA02t06931Z' => 'bra', 'BraA03t09787Z' => 'bra', 'BraA03t11890Z' => 'bra', 'BraA03t13345Z' => 'bra', 'BraA05t21684Z' => 'bra', 'BraA05t21686Z' => 'bra', 'BraA06t26125Z' => 'bra', 'BraA07t30609Z' => 'bra', 'BraA07t31508Z' => 'bra', 'BraA08t32315Z' => 'bra', 'BraA10t43973Z' => 'bra', 'C01p43440' => 'bna', 'C02p04250' => 'bna', 'C02p10640' => 'bna', 'C02p31400' => 'bna', 'C03p04910' => 'bna', 'C03p32120' => 'bna', 'C03p51280' => 'bna', 'C03p61030' => 'bna', 'C03p90050' => 'bna', 'C05p43310' => 'bna', 'C05p43320' => 'bna', 'C06p33870' => 'bna', 'C06p47880' => 'bna', 'C09p54940' => 'bna', 'CAN.G1074.10' => 'can', 'CAN.G134.44' => 'can', 'CAN.G156.13' => 'can', 'CAN.G344.3' => 'can', 'CAN.G363.20' => 'can', 'CAN.G383.8' => 'can', 'CAN.G388.63' => 'can', 'CAN.G388.64' => 'can', 'CAN.G442.2' => 'can', 'CAN.G45.9' => 'can', 'CAN.G52.5' => 'can', 'CAN.G613.3' => 'can', 'CAN.G65.222' => 'can', 'CAN.G65.223' => 'can', 'CAN.G864.1' => 'can', 'CANSAT01G2602' => 'cansat', 'CANSAT25G1645' => 'cansat', 'CANSAT54G0806' => 'cansat', 'CANSAT56G3644' => 'cansat', 'CARHR066800' => 'chi', 'CARHR096600' => 'chi', 'CARHR119380' => 'chi', 'CARHR191750' => 'chi', 'CARHR203170' => 'chi', 'CARHR279010' => 'chi', 'Carub.0002s2048' => 'cru', 'Carub.0003s2073' => 'cru', 'Carub.0004s0754' => 'cru', 'Carub.0006s0858' => 'cru', 'Carub.0006s1943' => 'cru', 'Carub.0008s2594' => 'cru', 'Ca_01273_v3' => 'car', 'Ca_06157_v3' => 'car', 'Ca_16539_v3' => 'car', 'Ca_17722_v3' => 'car', 'Ca_22181_v3' => 'car', 'Ca_24108_v3' => 'car', 'Ca_29849_v3' => 'car', 'CBR_g17647' => 'cbr', 'CBR_g30137' => 'cbr', 'CBR_g57605' => 'cbr', 'CBR_g6607' => 'cbr', 'Cc01_g04200' => 'ccan', 'Cc01_g07490' => 'ccan', 'Cc07_g15450' => 'ccan', 'Cc07_g21390' => 'ccan', 'CDE02G4732' => 'cde', 'CDE04G0510' => 'cde', 'CDE04G1783' => 'cde', 'CDE04G2585' => 'cde', 'CDE06G1416' => 'cde', 'CDE06G2638' => 'cde', 'CDE07G0476' => 'cde', 'CDE07G0914' => 'cde', 'CDE07G1508' => 'cde', 'CDE07G1755' => 'cde', 'CDE08G0534' => 'cde', 'CDE09G0271' => 'cde', 'Cfa002688' => 'cfa', 'Cfa009700' => 'cfa', 'Cfa010264' => 'cfa', 'Cfa010435' => 'cfa', 'Cfa013097' => 'cfa', 'Ciclev10000608m.g' => 'ccl', 'Ciclev10000617m.g' => 'ccl', 'Ciclev10014617m.g' => 'ccl', 'Ciclev10015261m.g' => 'ccl', 'Ciclev10017431m.g' => 'ccl', 'Ciclev10027510m.g' => 'ccl', 'CiPaw.03G140100' => 'cil', 'CiPaw.13G048000' => 'cil', 'CiPaw.13G120900' => 'cil', 'CiPaw.13G165200' => 'cil', 'CiPaw.14G037900' => 'cil', 'CiPaw.14G123700' => 'cil', 'ClCG00G002220' => 'cla', 'ClCG03G013440' => 'cla', 'ClCG03G014100' => 'cla', 'ClCG07G009610' => 'cla', 'ClCG08G008610' => 'cla', 'COL.COLO4_09900' => 'col', 'COL.COLO4_09934' => 'col', 'COL.COLO4_18362' => 'col', 'Cpa.g.sc103.60' => 'cpa', 'Cpa.g.sc20.234' => 'cpa', 'Cpa.g.sc54.30' => 'cpa', 'Cpa.g.sc84.104' => 'cpa', 'CsaV3_1G042150' => 'csa', 'CsaV3_1G042580' => 'csa', 'CsaV3_4G004700' => 'csa', 'CsaV3_6G004610' => 'csa', 'CsaV3_UNG137050' => 'csa', 'CsaV3_UNG146120' => 'csa', 'CsaV3_UNG218480' => 'csa', 'CSS0018790' => 'camsi', 'CSS0020072' => 'camsi', 'CSS0026723' => 'camsi', 'CSS0029751' => 'camsi', 'CSS0039965' => 'camsi', 'CSS0042368' => 'camsi', 'CSS0042440' => 'camsi', 'DCAR_002039' => 'dca', 'DCAR_006623' => 'dca', 'DCAR_009728' => 'dca', 'DCAR_018974' => 'dca', 'DCAR_025316' => 'dca', 'DCAR_029939' => 'dca', 'Dinv08049' => 'din', 'Dinv09388' => 'din', 'Dinv10728' => 'din', 'Dinv10733' => 'din', 'Dinv25741' => 'din', 'Duzib150G0618' => 'dzi', 'Duzib150G1046' => 'dzi', 'Duzib168G0956' => 'dzi', 'Duzib168G1232' => 'dzi', 'Duzib170G0288' => 'dzi', 'Duzib170G0752' => 'dzi', 'Duzib170G1134' => 'dzi', 'ECA232G3940' => 'eca', 'ECA233G5298' => 'eca', 'ECA238G0800' => 'eca', 'ECA238G4270' => 'eca', 'EL10Ac4g08800' => 'bvu', 'EL10Ac4g10373' => 'bvu', 'EL10Ac8g18273' => 'bvu', 'EL10Ac8g18421' => 'bvu', 'EL10Ac9g22359' => 'bvu', 'Eucgr.B03664' => 'egr', 'Eucgr.G02632' => 'egr', 'Eucgr.I00420' => 'egr', 'Eucgr.J00631' => 'egr', 'FAN01G0235' => 'fan', 'FAN01G2732' => 'fan', 'FAN01G3087' => 'fan', 'FAN03G0370' => 'fan', 'FAN06G1283' => 'fan', 'FAN06G2640' => 'fan', 'FAN06G3294' => 'fan', 'FAN11G0953' => 'fan', 'FAN11G1499' => 'fan', 'FAN11G3922' => 'fan', 'FAN16G0357' => 'fan', 'FAN16G2838' => 'fan', 'FAN19G3072' => 'fan', 'FAN19G3219' => 'fan', 'FAN21G0701' => 'fan', 'FAN21G1194' => 'fan', 'FAN21G2729' => 'fan', 'FAN23G0075' => 'fan', 'FAN23G1867' => 'fan', 'FAN23G2227' => 'fan', 'FAN25G1595' => 'fan', 'FAN25G2176' => 'fan', 'FAN25G3442' => 'fan', 'FAN26G0335' => 'fan', 'FAN26G0654' => 'fan', 'FAN28G2364' => 'fan', 'FvH4_1g21280' => 'fve', 'FvH4_1g28720' => 'fve', 'FvH4_3g05340' => 'fve', 'FvH4_3g11880' => 'fve', 'FvH4_3g43580' => 'fve', 'FvH4_3g43590' => 'fve', 'FvH4_7g04851' => 'fve', 'FvH4_7g04852' => 'fve', 'FvH4_7g04940' => 'fve', 'Glyma.02G274600' => 'gma', 'Glyma.05G180300' => 'gma', 'Glyma.08G137800' => 'gma', 'Glyma.11G239000' => 'gma', 'Glyma.13G076700' => 'gma', 'Glyma.13G076800' => 'gma', 'Glyma.13G342500' => 'gma', 'Glyma.14G041500' => 'gma', 'Glyma.15G031800' => 'gma', 'Glyma.18G018400' => 'gma', 'Glyma.20G051500' => 'gma', 'Gohir.A02G131400' => 'ghi', 'Gohir.A03G034800' => 'ghi', 'Gohir.A03G034900' => 'ghi', 'Gohir.A05G067450' => 'ghi', 'Gohir.A05G067500' => 'ghi', 'Gohir.A05G101500' => 'ghi', 'Gohir.A06G108800' => 'ghi', 'Gohir.A08G196600' => 'ghi', 'Gohir.A13G215700' => 'ghi', 'Gohir.A13G230100' => 'ghi', 'Gohir.D03G042800' => 'ghi', 'Gohir.D03G133500' => 'ghi', 'Gohir.D05G070400' => 'ghi', 'Gohir.D05G101300' => 'ghi', 'Gohir.D06G112800' => 'ghi', 'Gohir.D07G172550' => 'ghi', 'Gohir.D08G037301' => 'ghi', 'Gohir.D08G213800' => 'ghi', 'Gohir.D12G083502' => 'ghi', 'Gohir.D13G219400' => 'ghi', 'Gohir.D13G235600' => 'ghi', 'Gorai.001G192700' => 'gra', 'Gorai.003G043500' => 'gra', 'Gorai.003G140600' => 'gra', 'Gorai.004G035300' => 'gra', 'Gorai.004G227800' => 'gra', 'Gorai.007G241000' => 'gra', 'Gorai.009G071400' => 'gra', 'Gorai.009G105400' => 'gra', 'Gorai.010G128700' => 'gra', 'Gorai.013G250300' => 'gra', 'Gorai.013G266300' => 'gra', 'GSVIVG01025324001' => 'vvi', 'GSVIVG01027355001' => 'vvi', 'GSVIVG01037473001' => 'vvi', 'HanXRQChr02g0056481' => 'han', 'HanXRQChr09g0258291' => 'han', 'HanXRQChr12g0378231' => 'han', 'HanXRQChr13g0403931' => 'han', 'HanXRQChr14g0447461' => 'han', 'HanXRQChr14g0459091' => 'han', 'HanXRQChr15g0483721' => 'han', 'Haze_03389' => 'cav', 'Haze_23049' => 'cav', 'Haze_23673' => 'cav', 'Haze_24959' => 'cav', 'Hma1.2p1_0218F.1_g092710' => 'hma', 'Hma1.2p1_0290F.1_g114860' => 'hma', 'Hma1.2p1_0728F.1_g209410' => 'hma', 'HPP92_006672' => 'vpl', 'HPP92_006673' => 'vpl', 'HPP92_017816' => 'vpl', 'HPP92_017817' => 'vpl', 'HPP92_017830' => 'vpl', 'HPP92_020780' => 'vpl', 'HPP92_021160' => 'vpl', 'HPP92_028187' => 'vpl', 'Hund22078' => 'sun', 'Lalb_Chr03g0032421' => 'lal', 'Lalb_Chr04g0249691' => 'lal', 'Lalb_Chr04g0257581' => 'lal', 'Lalb_Chr10g0105921' => 'lal', 'Lalb_Chr14g0372281' => 'lal', 'Lalb_Chr15g0079331' => 'lal', 'Lalb_Chr17g0347541' => 'lal', 'Lalb_Chr19g0132691' => 'lal', 'Lalb_Chr19g0138241' => 'lal', 'Lalb_Chr22g0352271' => 'lal', 'Lalb_Chr24g0396951' => 'lal', 'Lj1C364T8' => 'lonja', 'Lj2C654T7' => 'lonja', 'Lj2C931T8' => 'lonja', 'Lj3g0021131' => 'lja', 'Lj3g0026175' => 'lja', 'Lj3g0026550' => 'lja', 'Lj4g0019490' => 'lja', 'Lj5g0001134' => 'lja', 'Lj6g0001407' => 'lja', 'Lj6g0015357' => 'lja', 'Lj9C661T11' => 'lonja', 'LjContig00564g0001972' => 'lja', 'Lju1319C2T7' => 'lonja', 'Lsat_1_v5_gn_2_35880' => 'lsa', 'Lsat_1_v5_gn_2_63620' => 'lsa', 'Lsat_1_v5_gn_6_50081' => 'lsa', 'Lsat_1_v5_gn_8_117601' => 'lsa', 'Manes.04G052000' => 'mes', 'Manes.06G168800' => 'mes', 'Manes.13G091500' => 'mes', 'Manes.13G091600' => 'mes', 'Manes.13G092960' => 'mes', 'Manes.14G014100' => 'mes', 'Mapoly0088s0024' => 'mpo', 'MBI01_g15750_MAGBIO' => 'mbi', 'MBI04_g14275_MAGBIO' => 'mbi', 'MBI04_g27133_MAGBIO' => 'mbi', 'MBI13_g43840_MAGBIO' => 'mbi', 'MBI19_g37617_MAGBIO' => 'mbi', 'MD01G1025900' => 'mdo', 'MD02G1266200' => 'mdo', 'MD02G1266300' => 'mdo', 'MD03G1020800' => 'mdo', 'MD07G1053500' => 'mdo', 'MD07G1053800' => 'mdo', 'MD08G1245800' => 'mdo', 'MD11G1022400' => 'mdo', 'MD15G1327300' => 'mdo', 'MD15G1441000' => 'mdo', 'Medtr1g015990' => 'mtr', 'Medtr1g024420' => 'mtr', 'Medtr2g098450' => 'mtr', 'Medtr2g098470' => 'mtr', 'Medtr3g010785' => 'mtr', 'Medtr3g010790' => 'mtr', 'Medtr3g078770' => 'mtr', 'Medtr3g087530' => 'mtr', 'Medtr5g087790' => 'mtr', 'Medtr6g060600' => 'mtr', 'Medtr6g060630' => 'mtr', 'Medtr6g460640' => 'mtr', 'Medtr7g095580' => 'mtr', 'Medtr8g091370' => 'mtr', 'MELO3C015210.2' => 'cme', 'MELO3C015633.2' => 'cme', 'MELO3C017592.2' => 'cme', 'MELO3C019931.2' => 'cme', 'Migut.B01164' => 'egut', 'Migut.D00719' => 'egut', 'Migut.H02373' => 'egut', 'Migut.H02375' => 'egut', 'Migut.H02376' => 'egut', 'Migut.H02377' => 'egut', 'Migut.N02294' => 'egut', 'Migut.N02421' => 'egut', 'MSTRG.17571' => 'ama', 'MSTRG.17663' => 'ama', 'MSTRG.18487' => 'ama', 'MSTRG.20482' => 'ama', 'Nitab4.5_0000271g0040' => 'nta', 'Nitab4.5_0000271g0090' => 'nta', 'Nitab4.5_0000271g0110' => 'nta', 'Nitab4.5_0000428g0210' => 'nta', 'Nitab4.5_0002184g0010' => 'nta', 'Nitab4.5_0002184g0030' => 'nta', 'Nitab4.5_0002687g0110' => 'nta', 'Nitab4.5_0003069g0060' => 'nta', 'Nitab4.5_0003635g0020' => 'nta', 'Nitab4.5_0003796g0080' => 'nta', 'Nitab4.5_0003807g0070' => 'nta', 'Nitab4.5_0006575g0030' => 'nta', 'Nitab4.5_0006859g0010' => 'nta', 'Nitab4.5_0007649g0020' => 'nta', 'Nitab4.5_0008999g0020' => 'nta', 'Nitab4.5_0009808g0030' => 'nta', 'Nn1g01732' => 'nnu', 'Nn1g02588' => 'nnu', 'Nn2g14408' => 'nnu', 'Nn2g14615' => 'nnu', 'Nn2g15574' => 'nnu', 'Nn3g17716' => 'nnu', 'Nn4g23501' => 'nnu', 'Nn4g26606' => 'nnu', 'Nn6g33881' => 'nnu', 'Nn6g35335' => 'nnu', 'Nn7g36062' => 'nnu', 'Oeu013045.1' => 'oeu', 'Oeu014060.2' => 'oeu', 'Oeu022225.1' => 'oeu', 'Oeu026661.1' => 'oeu', 'Oeu032078.1' => 'oeu', 'Oeu045790.1' => 'oeu', 'Oeu048808.1' => 'oeu', 'Oeu058666.1' => 'oeu', 'Oeu061150.1' => 'oeu', 'Os02g0574800' => 'osa', 'Os02g0689132' => 'osa', 'Os03g0324200' => 'osa', 'Os03g0324300' => 'osa', 'Os04g0456900' => 'osa', 'Os07g0685700' => 'osa', 'Os08g0508700' => 'osa', 'Os09g0490200' => 'osa', 'Peaxi162Scf00342g00073' => 'pax', 'Peaxi162Scf00422g00512' => 'pax', 'Peaxi162Scf00526g00042' => 'pax', 'Peaxi162Scf00559g00420' => 'pax', 'Peaxi162Scf00593g00325' => 'pax', 'Peaxi162Scf00773g00012' => 'pax', 'Peaxi162Scf01084g00017' => 'pax', 'PGR004G0838' => 'pgr', 'PGR102G0713' => 'pgr', 'PGR102G1988' => 'pgr', 'PGR102G2840' => 'pgr', 'PGR119G0809' => 'pgr', 'PGR142G1075' => 'pgr', 'PGSC0003DMG400005913' => 'stu', 'PGSC0003DMG400005914' => 'stu', 'PGSC0003DMG400005915' => 'stu', 'PGSC0003DMG400008712' => 'stu', 'PGSC0003DMG400016747' => 'stu', 'PGSC0003DMG400018067' => 'stu', 'PGSC0003DMG400020621' => 'stu', 'PGSC0003DMG400021381' => 'stu', 'PGSC0003DMG400027507' => 'stu', 'PGSC0003DMG400029908' => 'stu', 'Phvul.001G251100' => 'pvu', 'Phvul.002G253900' => 'pvu', 'Phvul.005G012200' => 'pvu', 'Phvul.006G011200' => 'pvu', 'Phvul.006G011300' => 'pvu', 'Phvul.008G207000' => 'pvu', 'Phvul.L011743' => 'pvu', 'Potri.001G015900' => 'ptr', 'Potri.001G015966' => 'ptr', 'Potri.003G210500' => 'ptr', 'Potri.004G197400' => 'ptr', 'Potri.008G011300' => 'ptr', 'Potri.009G159200' => 'ptr', 'Potri.010G247500' => 'ptr', 'Pp3c11_15260' => 'ppa', 'Pp3c7_9970' => 'ppa', 'Prupe.2G058400' => 'ppe', 'Prupe.2G058500' => 'ppe', 'Prupe.2G070300' => 'ppe', 'Prupe.6G018100' => 'ppe', 'Prupe.6G018200' => 'ppe', 'Prupe.6G181600' => 'ppe', 'Psat0s1896g0120' => 'psa', 'Psat2g022280' => 'psa', 'Psat2g022320' => 'psa', 'Psat2g156080' => 'psa', 'Psat5g089360' => 'psa', 'Psat5g109560' => 'psa', 'Psat5g288560' => 'psa', 'Psat7g053520' => 'psa', 'PSO017G6549' => 'pso', 'PSO133G0068' => 'pso', 'PSO133G0096' => 'pso', 'PSO339G1804' => 'pso', 'PSO339G4759' => 'pso', 'PSO384G4373' => 'pso', 'PSO478G3805' => 'pso', 'PSO541G0771' => 'pso', 'PSO541G5409' => 'pso', 'PSO541G5836' => 'pso', 'PSO675G4150' => 'pso', 'PSO801G0593' => 'pso', 'QL01p006143' => 'qlo', 'QL01p020207' => 'qlo', 'QL04p035531' => 'qlo', 'QL04p043102' => 'qlo', 'QL04p050738' => 'qlo', 'QL06p050010' => 'qlo', 'RcHm_v2.0_Chr1g0331011' => 'rch', 'RcHm_v2.0_Chr2g0115111' => 'rch', 'RcHm_v2.0_Chr5g0049961' => 'rch', 'RcHm_v2.0_Chr5g0078151' => 'rch', 'RcHm_v2.0_Chr5g0078161' => 'rch', 'Rhsim01G0189500' => 'rsi', 'Rhsim01G0196400' => 'rsi', 'Rhsim13G0225200' => 'rsi', 'Sabra01G0011100' => 'sbr', 'Sabra03G0153600' => 'sbr', 'Sabra04G0133800' => 'sbr', 'Sabra08G0007000' => 'sbr', 'Sabra09G0124500' => 'sbr', 'Sabra10G0192900' => 'sbr', 'SalBow2G2435' => 'sbo', 'SalBow3G0451' => 'sbo', 'SalBow6G1804' => 'sbo', 'SalBow8G5576' => 'sbo', 'Sc09g0004940' => 'sci', 'Sc12g0010460' => 'sci', 'Sc16g0005490' => 'sci', 'Sc16g0011700' => 'sci', 'Sc20g0001040' => 'sci', 'Sc21g0000230' => 'sci', 'Sed0003324' => 'sed', 'Sed0007475' => 'sed', 'Sed0007953' => 'sed', 'Sed0008914' => 'sed', 'Sed0011376' => 'sed', 'Sed0012160' => 'sed', 'Sed0014223' => 'sed', 'SEGI_07529' => 'sgi', 'SEGI_16333' => 'sgi', 'SEGI_24778' => 'sgi', 'SEGI_31836' => 'sgi', 'SGA_v2.0_scaffold1G00801' => 'sas', 'SGA_v2.0_scaffold29G12120' => 'sas', 'SGA_v2.0_scaffold3G01549' => 'sas', 'SGA_v2.0_scaffold79G25499' => 'sas', 'SGA_v2.0_scaffold8G04503' => 'sas', 'SHI11629' => 'shi', 'SHI20419' => 'shi', 'SHI21226' => 'shi', 'SHI25351' => 'shi', 'SHI30512' => 'shi', 'SMO089G0005' => 'smo', 'SMO200G0147' => 'smo', 'SMO200G0199' => 'smo', 'SMO200G0271' => 'smo', 'SMO201G0003' => 'smo', 'SMO209G0002' => 'smo', 'Solyc01g006650.2' => 'sly', 'Solyc01g009170.4' => 'sly', 'Solyc01g014480.3' => 'sly', 'Solyc01g096810.3' => 'sly', 'Solyc03g096630.1' => 'sly', 'Solyc04g054840.1' => 'sly', 'Solyc05g051875.1' => 'sly', 'Solyc06g073720.3' => 'sly', 'Solyc06g073730.2' => 'sly', 'Sopen01g002640' => 'spe', 'Sopen01g004640' => 'spe', 'Sopen01g009190' => 'spe', 'Sopen01g040510' => 'spe', 'Sopen03g026750' => 'spe', 'Sopen04g024640' => 'spe', 'Sopen05g030400' => 'spe', 'Sopen06g030120' => 'spe', 'Sopen06g030130' => 'spe', 'Sp1g37870' => 'spa', 'Sp1g37880' => 'spa', 'Sp2g28180' => 'spa', 'Sp3g18790' => 'spa', 'Sp4g08230' => 'spa', 'Sp5g28920' => 'spa', 'Sp6g23400' => 'spa', 'Sp6g33280' => 'spa', 'TAR163G0003' => 'tar', 'TAR369G0337' => 'tar', 'TAR369G0943' => 'tar', 'TAR623G1014' => 'tar', 'THA.LOC104800487' => 'tha', 'THA.LOC104800488' => 'tha', 'THA.LOC104804688' => 'tha', 'THA.LOC104812154' => 'tha', 'THA.LOC104816962' => 'tha', 'THA.LOC104816963' => 'tha', 'THA.LOC104818491' => 'tha', 'THA.LOC104824179' => 'tha', 'THA.LOC104826471' => 'tha', 'THA.LOC104826472' => 'tha', 'Thecc.01G104700' => 'tca', 'Thecc.09G224000' => 'tca', 'Thecc.09G338000' => 'tca', 'Thhalv10001938m.g' => 'esa', 'Thhalv10005551m.g' => 'esa', 'Thhalv10013166m.g' => 'esa', 'Thhalv10015634m.g' => 'esa', 'Thhalv10018327m.g' => 'esa', 'Thhalv10020292m.g' => 'esa', 'TPR.G12198' => 'tpr', 'TPR.G1495' => 'tpr', 'TPR.G1510' => 'tpr', 'TPR.G18848' => 'tpr', 'TPR.G2217' => 'tpr', 'TPR.G22218' => 'tpr', 'TPR.G33784' => 'tpr', 'TPR.G36367' => 'tpr', 'TPR.G5087' => 'tpr', 'TWI15G0036' => 'twi', 'TWI32G0588' => 'twi', 'TWI38G2026' => 'twi', 'TWI60G0275' => 'twi', 'TWI63G1341' => 'twi', 'TWI75G1647' => 'twi', 'TWI79G1590' => 'twi', 'VMungo1080G0482' => 'vmu', 'VMungo1080G0975' => 'vmu', 'VMungo1348G0002' => 'vmu', 'Zm00001eb015440' => 'zma', 'Zm00001eb034980' => 'zma', 'Zm00001eb081010' => 'zma', 'Zm00001eb111680' => 'zma', 'Zm00001eb182890' => 'zma', 'Zm00001eb244830' => 'zma', 'Zm00001eb316730' => 'zma', 'Zm00001eb331080' => 'zma', 'Zm00001eb395480' => 'zma' ) $gf_id = 'HOM05D000843' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000843' ) $data_identifier = 'HOM05D000843' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 2, 'arhy' => (int) 18, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 26, 'bol' => (int) 12, 'bra' => (int) 14, 'can' => (int) 15, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 4, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 7, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 4, 'fan' => (int) 26, 'fve' => (int) 9, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 8, 'sun' => (int) 1, 'lal' => (int) 11, 'lonja' => (int) 5, 'lja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 6, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 14, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 4, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 4, 'tha' => (int) 10, 'tca' => (int) 3, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb395480' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1